FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane2_Index14_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 22806701 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 6071185 | 3.0382247 | 4.7922244 | 2 |
| CCAGG | 4798470 | 2.5980623 | 5.2271037 | 1 |
| CCTGG | 4775980 | 2.5747385 | 6.19386 | 1 |
| GAAGA | 4818565 | 2.5506644 | 5.093227 | 2 |
| CTTCT | 4945080 | 2.498633 | 5.440926 | 1 |
| CTGGA | 4589675 | 2.4465098 | 8.810489 | 1 |
| TCCAG | 4520980 | 2.3697832 | 5.73788 | 2 |
| CTGCT | 4474860 | 2.335497 | 5.0899343 | 1 |
| CTCCT | 4483880 | 2.3012555 | 7.4957743 | 1 |
| CTGGG | 4157630 | 2.2793207 | 8.476856 | 1 |
| CAGGA | 4175670 | 2.2354624 | 5.591998 | 1 |
| CCCAG | 4114340 | 2.190574 | 7.2623706 | 1 |
| CTTCA | 4312130 | 2.188251 | 5.6086063 | 1 |
| CTCCA | 4234925 | 2.1828942 | 8.133346 | 1 |
| CAGAA | 4040490 | 2.1032002 | 5.128257 | 1 |
| CTCTG | 3918660 | 2.0452077 | 6.210309 | 1 |
| CTGGC | 3492500 | 1.8828123 | 5.400663 | 1 |
| TGGAA | 3521200 | 1.8558811 | 5.2027774 | 2 |
| CTGAA | 3559550 | 1.8448689 | 5.441423 | 1 |
| CTCAG | 3333870 | 1.7475301 | 6.1784606 | 1 |
| CTTTG | 3314475 | 1.7030716 | 5.011291 | 1 |
| CTGGT | 3136300 | 1.6645869 | 5.147948 | 1 |
| CTTGG | 3067975 | 1.6283237 | 5.300287 | 1 |